Select the Original Genome from the drop down menu which indicates the species of your .BED file.
Select the version of the genome you are using, for example hg18 for a human genome.
On the right side of the top of the page make the same selections for the genome you want to convert to, for example set 'New Genome' to 'Human' and 'New Assembly' to 'hg38'.
Scroll to the bottom of the page and either paste your .BED file into the text box or use the Browse button to upload your .BED file. Note: If you don't know if your .BED file is compatible click on the .BED link above the text box to see examples.
Click 'Submit File' below the text box.
A 'Results' section will appear on the webpage with the number of regions successfully converted. Click on the 'View Conversions' link.
Save the converted .BED file to your computer.
Using Your Design Files
Your xGen Lockdown Probe design can be visualized using the UCSC Genome Browser to align the designed target and probe positions as custom tracks. Get started by following these instructions: